A human dietary intervention study where participants receive different commonly consumed diet patterns and we are examining the impact it has on epigenetic markers in the sperm. This branch of the study has twin male participants.
FEASS[Twins]
Why?
Research from animal models has shown that the diets of males prior to conception cause phenotypic alteration of subsequent offspring, including modulation of metabolism, development, and cognitive function. These models also indicate that dietary perturbation causes epigenetic reprogramming of the male germline, indicating that diet-induced spermatozoa epigenetic modulation is likely a key mechanism underlying the inherited phenotypes caused by paternal nutrition. Epidemiological studies identify that a correlative link exists between paternal nutrition and offspring health, such as paternal famine exposure being associated with offspring diabetes and obesity, and paternal obesity being associated with increased risk of offspring obesity, mortality and autism spectrum disorder.
Nonetheless, the impact of paternal diet on the sperm epigenome and offspring health has undergone minimal investigation in humans and warrants further study. The purpose of this study is to elucidate the role of acute dietary intake in male populations, and its impact on spermatozoa quality, integrity, content and epigenetic programming. We will study this relationship utilising a co-twin randomised design in order to investigate monozygotic twin pairs that are discordant for nutritional exposure.
Studying this phenomenon in a population of twins gives us the unique advantage of studying the epigenetic modulation in individuals with highly overlapping genomes, along with studying subjects which have generally similar baseline physiological parameters and highly comparable pre and perinatal experiences.
How?
For this study, we will provide twin male pair participants with discordant prescribed diets for a three-week increment, and we will collect health information and biological samples prior to and after delivery of the dietary intervention. The diets will consist of a “Processed diet” mimicking a traditional western dietary intake pattern and an “Unprocessed diet” based upon current dietary guidelines at quantities adequate for the participants energetic needs.
We have chosen to study these two dietary patterns to compare the physiological effects of consuming dietary patterns mimicking what men are supposed to eat versus what they are actually eating. The processed diet is based on the typical dietary intake patterns of American men aged 19-30. Food and beverage products provided will fall into the category of processed foods and ultra-processed foods in accordance with the NOVA food processing classification system. The unprocessed diets will meet the Nordic and Australian dietary guidelines for food groups and micronutrients. Food and beverage products provided will fall into the category of unprocessed/minimally processed foods and processed culinary ingredients in accordance with the NOVA food processing classification system.
We have designed these diets to be macronutrient matched, wherein both the processed and unprocessed diets provide 49% of kcal from carbohydrates, 35% from fat, and 16% from protein, to control for macronutrient variability as a confounding factor, and focus on the quality and content of food products provided on the induced effects.
Biological specimens and survey information from participants will be collected before and after the nutrition intervention. This includes assessment of anthropometric characteristics, survey information surrounding lifestyle, physical, and mental health, classical semen quality characteristics, serum metabolic markers, reproductive hormones, stress hormones and appetite hormones. Biological samples collected include blood, semen and saliva. Comprehensive profiling of fertility parameters will be conducted on the participants, characterising their levels of reproductive hormones before and after dietary intervention, the metabolomic content of seminal plasma, and sperm assessment of volume, count, viability, motility, morphology, and DNA fragmentation. Following conclusion of the intervention, the fraction of mature spermatozoa from the participants collected before and after the dietary intervention will be further analysed for epigenetic features. Specifically, we will conduct smallRNA sequencing, reduced representation bisulfite sequencing and ATAC-sequencing in order to determine how the sperm epigenome is remodelled following the acute dietary interventions.
Results
Study Leaders
Other studies
GeckoTEk
01TEs (Transposable Elements), escape epigenome reprogramming and therefore represent potential hotspots of heritable information that can be passed on to future generations. The Latin suffix –theca (from Ancient Greek thēkē) is used for any kind of collection. The goal of the GeckoTEk project is to generate a near-complete human sperm (epi)genome of high-quality, using third-generation sequencing technologies with a particular focus on difficult genomic regions and repetitive sequences.
3-D Epigenetics
Three-dimensional conformation of genomes
02Three-dimensional conformation of genomes
An ex vivo characterisation of tissue specific epigenetic remodelling in offspring sired from nutritionally challenged fathers. We utilise approaches such as HI-C and ATAC-seq to develop a picture of genetic architecture, and integrate chromatin confirmation and transcriptomic data to determine how epigenetic regulatory elements reshape the genome.
epiPIG
A nutritional intervention study with mini-pigs.
03A nutritional intervention study with mini-pigs.
EpiPIG is a research study in which we are giving mini-pigs either a ‘Western’ high fat/high sugar diet or a normal pig diet to better understand what epigenetic impact this has on their sperm.
FEAS[Singletons]T
Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Singletons Study.
05Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Singletons Study.
A human dietary intervention study where participants receive different commonly consumed diet patterns and we are examining the impact it has on epigenetic markers in the sperm. This part of the study is with individual people, singletons.
FEASS[Twins]
Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Twins Study.
06Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Twins Study.
A human dietary intervention study where participants receive different commonly consumed diet patterns and we are examining the impact it has on epigenetic markers in the sperm. This branch of the study has twin male participants.
geoMOUSE
A nutritional intervention study, using the principles of Nutritional Geometry study with mice
07A nutritional intervention study, using the principles of Nutritional Geometry study with mice
A dietary intervention study in which male mice are given one of 10 diets with different proportions of protein, fat and carbohydrates, and then mated to produce offspring. Following which, we examine the effect of these different diets on the overall health and behaviour of both the males and their offspring. We are especially looking for an epigenetic patterns.
geoMOUSE 2.0
Nutritional study and epigenetics modification, a cognitive approach in mice
08Nutritional study and epigenetics modification, a cognitive approach in mice
A dietary intervention study building on the results from the first geoMOUSE project. Here, one of three isocaloric diets of varying macronutrient compositions are given to male mice, which are then mated to produce offspring. This study aims to extend the investigation on whether offspring epigenetic profiles are influenced by paternal nutrition and how this affects behavioral and cognitive outcomes.
GUINepiG
A nutritional intervention study with guinea pigs
09A nutritional intervention study with guinea pigs
A dietary intervention study with guinea pigs fed high or low –fat diets with or without additional Vitamin C to identify through which mechanisms nutritional factors influence epigenetic inheritance of obesity and metabolic disease.
SEAS
Sperm Epigenomics Across Species
10Sperm Epigenomics Across Species
A partnership with Taronga Zoo and the Copenhagen Zoo to assess sperm epigenetic signatures across a wide range of species. The study aims to build a reference map of sperm epigenome modifications among animal species to understand similarities and differences in what environmental information is transmitted in sperm.
SEAS = Sperm Epigenomics Across Species
[S]Exercise
Sperm Epigenetics and Exercise
11Sperm Epigenetics and Exercise
Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots.
We exposed young men to a 6-week endurance training exercise regime, and measured the epigenetic signature of their sperm before and after the intervention. This study highlighted exercise-induced remodelling of genes involved in the brain.
GECKO Origin
Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans
12Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans
The epigenetic signature of both lean and obese men, and men before after weight loss was examined, highlighting both rapid and long-term remodelling of the sperm epigenome at gene regions involved in appetite regulation.