A human dietary intervention study where participants receive different commonly consumed diet patterns and we are examining the impact it has on epigenetic markers in the sperm. This part of the study is with individual people, singletons.
FEAS[Singletons]T
Why?
The nutritional statues of parents, wherein excess or inadequate intake of certain dietary factors prior to conceiving a child, causes variable health outcomes for the child throughout the life course. Fairly well-developed understandings of this connection in mothers and mothers-to-be has led to specified international dietary guidelines for periconception and preconception care. However, recommendations for fathers-to-be are substantially absent due to gaps in knowledge surrounding how paternal diet prior to conception influences the downstream health status of the next generation. Studying the epigenome of the male germline and the influence of nutritional status in men on the sperm epigenetic landscape is the first step in providing insight into the mechanistic link between paternal diet and subsequent offspring health.
In this study, we aim to elucidate the role of acute dietary intake in male populations, and its impact on spermatozoa quality, integrity, content and epigenetic programming. We hypothesize that exposure of men to a conventionally healthy (unprocessed diet at calorically adequate and excessive quantities) versus a conventionally unhealthy diet (processed diet at calorically adequate and excessive quantities) will induce epigenetic changes to the sperm at genomic regions involved in development and metabolism.
How?
We will conduct a dual-arm cross-over design clinical nutrition intervention using a cohort of young health men in Copenhagen where participants will firstly be randomised to an adequate calorie or an excessive calorie arm of the study. Within the two study arms, participants will be further randomised to receive a three-week intervention of either a processed or unprocessed diet. Each participant will then undergo a twelve-week washout period followed up by a within-arm crossover to the alternative dietary treatment.
Participants in the adequate calorie diet groups will receive food allocations in accordance with their nutritional needs and participants in the excessive calorie groups will receive food allocations 500 kcal in excess of their nutritional needs per day. The processed diet is based on the typical dietary intake patterns of American men aged 19-30. Food and beverage products provided will fall into the category of processed foods and ultra-processed foods in accordance with the NOVA food processing classification system. The unprocessed diets will meet the Nordic and Australian dietary guidelines for food groups and micronutrients. Food and beverage products provided will fall into the category of unprocessed/minimally processed foods and processed culinary ingredients in accordance with the NOVA food processing classification system.
We have designed these diets to be macronutrient matched, wherein both the processed and unprocessed diets provide 49% of kcal from carbohydrates, 35% from fat, and 16% from protein, to control for macronutrient variability as a confounding factor, and focus on the quality and content of food products provided on the induced effects.
Biological specimens and survey information from participants will be collected at several time points throughout the study. This includes assessment of anthropometric characteristics, survey information surrounding lifestyle, physical, and mental health, classical semen quality characteristics, serum metabolic markers, reproductive hormones, and appetite hormones. Biological samples collected include blood, semen and saliva. Following conclusion of the intervention, the fraction of mature spermatozoa will be further analysed for epigenetic features. Specifically, we will conduct smallRNA sequencing, reduced representation bisulfite sequencing and ATAC-sequencing in order to determine how the sperm epigenome is remodelled following the acute dietary interventions.
Results
Study Leaders
Other studies
GeckoTEk
01TEs (Transposable Elements), escape epigenome reprogramming and therefore represent potential hotspots of heritable information that can be passed on to future generations. The Latin suffix –theca (from Ancient Greek thēkē) is used for any kind of collection. The goal of the GeckoTEk project is to generate a near-complete human sperm (epi)genome of high-quality, using third-generation sequencing technologies with a particular focus on difficult genomic regions and repetitive sequences.
3-D Epigenetics
Three-dimensional conformation of genomes
02Three-dimensional conformation of genomes
An ex vivo characterisation of tissue specific epigenetic remodelling in offspring sired from nutritionally challenged fathers. We utilise approaches such as HI-C and ATAC-seq to develop a picture of genetic architecture, and integrate chromatin confirmation and transcriptomic data to determine how epigenetic regulatory elements reshape the genome.
epiPIG
A nutritional intervention study with mini-pigs.
03A nutritional intervention study with mini-pigs.
EpiPIG is a research study in which we are giving mini-pigs either a ‘Western’ high fat/high sugar diet or a normal pig diet to better understand what epigenetic impact this has on their sperm.
FEAS[Singletons]T
Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Singletons Study.
05Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Singletons Study.
A human dietary intervention study where participants receive different commonly consumed diet patterns and we are examining the impact it has on epigenetic markers in the sperm. This part of the study is with individual people, singletons.
FEASS[Twins]
Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Twins Study.
06Food intake and Epigenetic Alteration in the Spermatozoa of Singletons and Twins – Twins Study.
A human dietary intervention study where participants receive different commonly consumed diet patterns and we are examining the impact it has on epigenetic markers in the sperm. This branch of the study has twin male participants.
geoMOUSE
A nutritional intervention study, using the principles of Nutritional Geometry study with mice
07A nutritional intervention study, using the principles of Nutritional Geometry study with mice
A dietary intervention study in which male mice are given one of 10 diets with different proportions of protein, fat and carbohydrates, and then mated to produce offspring. Following which, we examine the effect of these different diets on the overall health and behaviour of both the males and their offspring. We are especially looking for an epigenetic patterns.
geoMOUSE 2.0
Nutritional study and epigenetics modification, a cognitive approach in mice
08Nutritional study and epigenetics modification, a cognitive approach in mice
A dietary intervention study building on the results from the first geoMOUSE project. Here, one of three isocaloric diets of varying macronutrient compositions are given to male mice, which are then mated to produce offspring. This study aims to extend the investigation on whether offspring epigenetic profiles are influenced by paternal nutrition and how this affects behavioral and cognitive outcomes.
GUINepiG
A nutritional intervention study with guinea pigs
09A nutritional intervention study with guinea pigs
A dietary intervention study with guinea pigs fed high or low –fat diets with or without additional Vitamin C to identify through which mechanisms nutritional factors influence epigenetic inheritance of obesity and metabolic disease.
SEAS
Sperm Epigenomics Across Species
10Sperm Epigenomics Across Species
A partnership with Taronga Zoo and the Copenhagen Zoo to assess sperm epigenetic signatures across a wide range of species. The study aims to build a reference map of sperm epigenome modifications among animal species to understand similarities and differences in what environmental information is transmitted in sperm.
SEAS = Sperm Epigenomics Across Species
[S]Exercise
Sperm Epigenetics and Exercise
11Sperm Epigenetics and Exercise
Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots.
We exposed young men to a 6-week endurance training exercise regime, and measured the epigenetic signature of their sperm before and after the intervention. This study highlighted exercise-induced remodelling of genes involved in the brain.
GECKO Origin
Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans
12Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans
The epigenetic signature of both lean and obese men, and men before after weight loss was examined, highlighting both rapid and long-term remodelling of the sperm epigenome at gene regions involved in appetite regulation.